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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015896414.1_cds_XP_016447884.1_42597
CDS Infomation

[gene=LOC107772942] [db_xref=GeneID:107772942] [protein=shikimate O-hydroxycinnamoyltransferase-like] [partial=5'] [exception=annotated by transcript or proteomic data] [protein_id=XP_016447884.1] [location=<619..1503] [gbkey=CDS]
Sequence

GTTACTCGTTTCAAATGTGGTGGAGTTTCACTTGGTGGAGGAGTATTCCACACTCTATCA
GATGGTCTCTCATCCATTCACTTCATCAACACATGGTCCGATATTGCCCGAGGCCTCTCC
GTCGTCATCCCGCCGTTCATTGACCGGACCCTCCTCCGTGCACGGGACCCACCGACATCG
TCGTTCGAACACGTCGAGTATCATCCTCCTCCATCTCTTATTTCATCATCAAAAACCAAA
GAATCCACTAGCCCAAAGCCTAGTACCACAACCATGTTAAAATTCTCTAGTGACCAACTT
GGGCTTCTAAAGTCCAAGTCCAAACATGATGGTAGCACTTACGAAATCCTCGCGGCCCAT
ATTTGGCGTTGCACGTGCAAGGCACGTGCACTGTCCGACGATCAATTGACCAAATTACAT
GTGGCCACTGATGGTAGGTCTAGGCTTTGCCCTCCTTTGCCACCAGGTTACTTAGGAAAT
GTTGTGTTCACAGGCACACCTATGGCAAAATCAAGTGAACTTTTACAAGAACCATTGACA
AATTCAGCCAAGAGAATTCATAGTGCATTATCAAAAATGGATGACAATTACCTAAGATCA
GCTCTCGATTACCTCGAATTACTGCCCGATTTATCGGCTTTAATCCGTGGACCGACGTAC
TTTGCTAGCCCTAATCTTAATATTAATAGTTGGACTAGATTGCCTGTTCATGATTCAGAT
TTTGGATGGGGAAGGCCAATTCATATGGGACCAGCTTGCATTTTATATGAAGGGACAGTT
TATATATTGCCAAGTCCAAATAGTAAAGATAGGAACTTGCGTTTGGCTGTTTGTTTAGAT
GCTGATCACATGCCACTATTTGAGAAGTATTTGTATGAATTTTGA

Peptide Sequence

PEP ID

XP_016447884.1
PEP Infomation

PREDICTED: shikimate O-hydroxycinnamoyltransferase-like [Nicotiana tabacum]
Sequence

MGSEKMMKINIKESTLVKPSKPTPTKRLWSSNLDLIVGRIHLLTVYFYKPNGSSNFFDSK
IMKEALSNVLVSFYPMAGRLARDEQGRIEINCNGEGVLFVEAESDAFVDDFGDFTPSLEL
RKLIPTVDTSGDISTFPLIIFQVTRFKCGGVSLGGGVFHTLSDGLSSIHFINTWSDIARG
LSVVIPPFIDRTLLRARDPPTSSFEHVEYHPPPSLISSSKTKESTSPKPSTTTMLKFSSD
QLGLLKSKSKHDGSTYEILAAHIWRCTCKARALSDDQLTKLHVATDGRSRLCPPLPPGYL
GNVVFTGTPMAKSSELLQEPLTNSAKRIHSALSKMDDNYLRSALDYLELLPDLSALIRGP
TYFASPNLNINSWTRLPVHDSDFGWGRPIHMGPACILYEGTVYILPSPNSKDRNLRLAVC
LDADHMPLFEKYLYEF

Transcript Sequence

Gene sequence data has not been registered.